PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g116690.1
Common NameMTR_3g116690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 438aa    MW: 49823.6 Da    PI: 6.2901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g116690.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-10384432148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      +++W+++E + l+ +++  G g+Wk+I r      Rt+ ++k++w++ +
  Medtr3g116690.1 384 KKKWSQWEVDNLKTGIEVIGEGNWKSILRSYDfDERTEVDLKDKWRNMK 432
                      689******************************99***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-11379433IPR009057Homeodomain-like
PROSITE profilePS5129415.586379436IPR017930Myb domain
SMARTSM007171.0E-7383434IPR001005SANT/Myb domain
PfamPF002497.5E-8384432IPR001005SANT/Myb domain
SuperFamilySSF466891.96E-11386433IPR009057Homeodomain-like
CDDcd116606.73E-16387433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MERLGWCLEF VLGESSIDSE CIKELIKVNY SVTEINNRNM RMIMLKFLED ELLSKASIDE  60
WMLELLEVLE KLLLIDCNDP SNPNPISHAM KSAYFYIAVE CTVKYLEAGG TSNYLQAAVD  120
RIWNRRFQKL EEGSYLLTPK WRLWKTLIND SLVDSQTMLR LASLSNTRKK AIKEVQRFLV  180
DARNNLVGPS FLHSVAAPAQ NQSHNESPME VDKDNGRLKG KASTTVVVVE EMATSTSCSK  240
IDSLPVNEAP KNKCNSVEFE TFANDPVPDS ICMTDIVRSD VAIEETNQEP QMENQSKDAN  300
VPNPQTCLNI NNDEANLTKA TSHHPSLMNP NSSARTHEWD DSIDGLQAGT VRGTSRIRLR  360
SPETKKLSPL KEYEPKKITK RRKKKKWSQW EVDNLKTGIE VIGEGNWKSI LRSYDFDERT  420
EVDLKDKWRN MKRSGCQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379385KRRKKKK
2380385RRKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.136442e-98flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0248760.0CU024876.6 M.truncatula DNA sequence from clone MTH2-144H1 on chromosome 3, complete sequence.
GenBankCU4682640.0CU468264.8 M.truncatula DNA sequence from clone MTH2-46F7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603927.10.0myb-like DNA-binding domain protein
TrEMBLG7J7290.0G7J729_MEDTR; Myb-like DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.15e-14TRF-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]